The Genome Institute Publications
Dalzell JJ, McVeigh P, Warnock ND, Mitreva M, Bird DM, Abad P, Fleming CC, Day…
RNAi Effector Diversity in Nematodes.
PLoS Negl Trop Dis. 2011 Jun;5(6):e1176. Epub 2011 Jun 7. PubMed | View Abstract
Smajs D, Zobaníková M, Strouhal M, Cejková D, Dugan-Rocha S, Pospíšilová P, Norris SJ, Albert…
Complete Genome Sequence of Treponema paraluiscuniculi, Strain Cuniculi A: The Loss of Infectivity to Humans Is Associated with Genome Decay.
PLoS One. 2011;6(5):e20415. Epub 2011 May 31. PubMed | View Abstract
Weinstock GM.
The volatile microbiome
Genome Biol. 2011 May 30;12(5):114. [Epub ahead of print] PubMed | View Abstract
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi…
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
Nat Biotechnol. 2011 May 6;29(5):415-420. [Epub ahead of print] PubMed | View Abstract
Williams GW, Davis PA, Rogers AS, Bieri T, Ozersky P, Spieth J.
Methods and strategies for gene structure curation in WormBase.
Database (Oxford). 2011 May 3;2011:baq039. Print 2011. PubMed | View Abstract
Duncavage EJ, Magrini V, Becker N, Armstrong JR, Demeter RT, Wylie T, Abel HJ, Pfeifer…
Hybrid capture and next-generation sequencing identify viral integration sites from formalin-fixed, paraffin-embedded tissue.
J Mol Diagn. 2011 May;13(3):325-33. PubMed | View Abstract
Taylor CM, Fischer K, Abubucker S, Wang Z, Martin J, Jiang D, Magliano M, Rosso…
Targeting protein-protein interactions for parasite control.
PLoS One. 2011 Apr 27;6(4):e18381. PubMed | View Abstract
Welch JS, Westervelt P, Ding L, Larson DE, Klco JM, Kulkarni S, Wallis J, Chen…
Use of Whole-Genome Sequencing to Diagnose a Cryptic Fusion Oncogene
JAMA. 2011 Apr 20;305(15):1577-84. PubMed | View Abstract
Link DC, Schuettpelz LG, Shen D, Wang J, Walter MJ, Kulkarni S, Payton JE, Ivanovich…
Identification of a Novel TP53 Cancer Susceptibility Mutation Through Whole-Genome Sequencing of a Patient With Therapy-Related AML
JAMA. 2011 Apr 20;305(15):1568-1576. PubMed | View Abstract
Forgetta V, Oughton MT, Marquis P, Brukner I, Blanchette R, Haub K, Magrini V, Mardis…
Fourteen-Genome Comparison Identifies DNA Markers for Severe Disease-Associated Strains of Clostridium difficile.
J Clin Microbiol. 2011 Jun;49(6):2230-8. Epub 2011 Apr 20. PubMed | View Abstract
Nallapareddy SR, Sillanpää J, Mitchell J, Singh KV, Chowdhury SA, Weinstock GM, Sullam PM, Murray…
Conservation of Ebp-type Pilus Genes among Enterococci and Demonstration of Their Role in Adherence of Enterococcus faecalis to Human Platelets.
Infect Immun. 2011 Jul;79(7):2911-20. Epub 2011 Apr 18. PubMed | View Abstract
Wendl MC, Wallis JW, Lin L, Kandoth C, Mardis ER, Wilson RK, Ding L.
PathScan: A Tool for Discerning Mutational Significance in Groups of Putative Cancer Genes.
Bioinformatics. 2011 Jun 15;27(12):1595-602. Epub 2011 Apr 14. PubMed | View Abstract
Jiao Y, Wickett NJ, Ayyampalayam S, Chanderbali AS, Landherr L, Ralph PE, Tomsho LP, Hu…
Ancestral polyploidy in seed plants and angiosperms.
Nature. 2011 May 5;473(7345):97-100. Epub 2011 Apr 10. PubMed | View Abstract
Zhang Z, Wang Y, Wang S, Liu J, Warren W, Mitreva M, Walter RB.
Transcriptome Analysis of Female and Male Xiphophorus maculatus Jp 163 A.
PLoS One. 2011 Apr 5;6(4):e18379. PubMed | View Abstract
Shen Y, Catchen J, Garcia T, Amores A, Beldroth I, Wagner JR, Zhang Z, Postlethwait…
Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F(1) interspecies hybrids.
Comp Biochem Physiol C Toxicol Pharmacol. 2011 Apr 3. [Epub ahead of print] PubMed | View Abstract
Ye L, Hillier LW, Minx P, Thane N, Locke D, Martin JC, Chen L, Mitreva…
A vertebrate case study of the quality of assemblies derived from next-generation sequences.
Genome Biol. 2011 Mar 31;12(3):R31. [Epub ahead of print] PubMed | View Abstract
Murphy JT, Bruinsma JJ, Schneider DL, Collier S, Guthrie J, Chinwalla A, Robertson JD, Mardis…
Histidine Protects Against Zinc and Nickel Toxicity in Caenorhabditis elegans.
PLoS Genet. 2011 Mar;7(3):e1002013. Epub 2011 Mar 24. PubMed | View Abstract
Wartman LD, Larson DE, Xiang Z, Ding L, Chen K, Lin L, Cahan P, Klco…
Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression.
J Clin Invest. 2011 Mar 23. pii: 45284. doi: 10.1172/JCI45284. [Epub ahead of print] PubMed | View Abstract
Walter MJ, Ding L, Shen D, Shao J, Grillot M, McLellan M, Fulton R, Schmidt…
Recurrent DNMT3A mutations in patients with myelodysplastic syndromes.
Leukemia. 2011 Jul;25(7):1153-8. doi: 10.1038/leu.2011.44. Epub 2011 Mar 18. PubMed | View Abstract
Welch JS, Yuan W, Ley TJ.
PML-RARA can increase hematopoietic self-renewal without causing a myeloproliferative disease in mice.
J Clin Invest. 2011 Mar 1. pii: 42953. doi: 10.1172/JCI42953. [Epub ahead of print] PubMed | View Abstract
Mitreva M, Jasmer DP, Zarlenga DS, Wang Z, Abubucker S, Martin J, Taylor CM, Yin…
The draft genome of the parasitic nematode Trichinella spiralis
Nature Genetics 2011 doi:10.1038/ng.769 PubMed | View Abstract
Mardis ER
A decade’s perspective on DNA sequencing technology
Nature. 2011 Feb 10;470(7333):198-203. PubMed | View Abstract
Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, Bouffard P, Caldera…
The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle
PLoS Genet. 2011 Feb 10;7(2):e1002007. PubMed | View Abstract
Muthappan V, Lee AY, Lamprecht TL, Akileswaran L, Dintzis SM, Lee C, Magrini V, Mardis…
Biome representational in silico karyotyping.
Genome Res. 2011 Apr;21(4):626-33. Epub 2011 Feb 10. PubMed | View Abstract
Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, Abyzov A, Yoon…
Mapping copy number variation by population-scale genome sequencing.
Nature. 2011 Feb 3;470(7332):59-65. PubMed | View Abstract
