Publications

MGI Publications

title citation publication date
143 Identification of Neoantigen-specific CD8+ T Cells in Two Murine Orthotopic Glioblastoma Models Using Cancer Immunogenomics Neurosurgery. 2016 Aug;63 Suppl 1:158. doi: 10.1227/01.neu.0000489713.52326.9a 2016-08-01
2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans. Nature. 1994 Mar 3;368(6466):32-8. 1994-03-03
400000 nematode ESTs on the Net. Trends Parasitol. 2003 Jul;19(7):283-6. 2003-06-01
A 50 Gene Intrinsic Subtype Classifier for Prognosis and Prediction of Benefit from Adjuvant Tamoxifen. Clin Cancer Res. 2012 Jun 18. [Epub ahead of print] 2012-06-18
A burst of segmental duplications in the genome of the African great ape ancestor. Nature. 2009 Feb 12;457(7231):877-81. 2009-02-12
A Catalog of Reference Genomes from the Human Microbiome. Science. 2010 May 21;328(5981):994-999. 2010-05-21
A Central Support System Can Facilitate Implementation and Sustainability of a Classroom-Based Undergraduate Research Experience (CURE) in Genomics. CBE Life Sci Educ. 2014 Winter;13(4):711-23. doi: 10.1187/cbe.13-10-0200. 2014-12-01
A common founding clone with TP53 and PTEN mutations gives rise to a concurrent germ cell tumor and acute megakaryoblastic leukemia Cold Spring Harb Mol Case Stud. 2016 Jan;2(1):a000687. doi: 10.1101/mcs.a000687 2015-01-01
A comparison of PAM50 intrinsic subtyping with immunohistochemistry and clinical prognostic factors in tamoxifen-treated estrogen receptor-positive breast cancer. Clin Cancer Res. 2010 Nov 1;16(21):5222-32. Epub 2010 Sep 13. 2010-11-01
A compilation of soybean ESTs: generation and analysis. Genome. 2002 Apr;45(2):329-38. 2002-03-31
A complete BAC-based physical map of the Arabidopsis thaliana genome. Nat Genet. 1999 Jul;22(3):271-5. 1999-06-01
A comprehensive promoter landscape identifies a novel promoter for CD133 in restricted tissues, cancers, and stem cells. Front Genet. 2013 Oct 29;4:209. doi: 10.3389/fgene.2013.00209. 2013-10-29
A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS One. 2012;7(6):e34242. doi: 10.1371/journal.pone.0034242. Epub 2012 Jun 13. 2012-06-13
A course-based research experience: how benefits change with increased investment in instructional time. CBE Life Sci Educ. 2014 Spring;13(1):111-30. doi: 10.1187/cbe-13-08-0152. 2014-03-01
A decade’s perspective on DNA sequencing technology Nature. 2011 Feb 10;470(7333):198-203. 2011-02-10
A dendritic cell vaccine increases the breadth and diversity of melanoma neoantigen-specific T cells. Science. 2015 Apr 2. pii: aaa3828. [Epub ahead of print] 2015-04-02
A dominant mutation in hexokinase 1 (HK1) causes retinitis pigmentosa. Invest Ophthalmol Vis Sci. 2014 Sep 4. pii: IOVS-14-15419. doi: 10.1167/iovs.14-15419. [Epub ahead of print] 2014-09-04
A dominant mutation in RPE65 identified by whole-exome sequencing causes retinitis pigmentosa with choroidal involvement. Eur J Hum Genet. 2011 Jun 8. doi: 10.1038/ejhg.2011.86. [Epub ahead of print] 2011-06-08
A Drosophila model of multiple endocrine neoplasia type 2. Genetics. 2005 Nov;171(3):1057-81. Epub 2005 Jun 18. 2005-11-01
A FAS-ligand variant associated with autoimmune lymphoproliferative syndrome in cats. Mamm Genome. 2016 Oct 21. [Epub ahead of print] 2016-10-21
A framework for human microbiome research. Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209. 2012-06-13
A general approach to single-nucleotide polymorphism discovery. Nat Genet. 1999 Dec;23(4):452-6. 1999-12-01
A general coverage theory for shotgun DNA sequencing. J Comput Biol. 2006 Jul-Aug;13(6):1177-96. 2006-08-08
A genetic mapping system in Caenorhabditis elegans based on polymorphic sequence-tagged sites. Genetics. 1992 Jul;131(3):609-24. 1992-07-01
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature. 2004 Dec 9;432(7018):717-22. 2004-12-09
A genome-wide comparison of recent chimpanzee and human segmental duplications. Nature. 2005 Sep 1;437(7055):88-93. 2005-09-15
A genomic analysis of Philadelphia chromosome-negative AML arising in patients with CML Blood Cancer J. 2016 Apr 8;6:e413. doi: 10.1038/bcj.2016.18 2016-04-08
A genomic case study of mixed fibrolamellar hepatocellular carcinoma. Ann Oncol. 2016 Mar 30. pii: mdw135. [Epub ahead of print] 2016-03-30
A global reference for human genetic variation. Nature. 2015 Oct 1;526(7571):68-74. doi: 10.1038/nature15393. 2015-10-01
A high-resolution map of human evolutionary constraint using 29 mammals. Nature. 2011 Oct 12;478(7370):476-82. doi: 10.1038/nature10530. 2011-10-12
A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination G3 (Bethesda). 2016 Jun 1;6(6):1607-16. doi: 10.1534/g3.116.028746 2016-06-01
A human genome structural variation sequencing resource reveals insights into mutational mechanisms. Cell. 2010 Nov 24;143(5):837-47. 2010-11-24
A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk. Nat Genet. 2010 Sep;42(9):745-50. Epub 2010 Aug 22. 2010-09-01
A limited role for gene duplications in the evolution of platypus venom. Mol Biol Evol. 2012 Jan;29(1):167-77. doi: 10.1093/molbev/msr180. Epub 2011 Aug 3. 2012-01-01
A Lover and a Fighter: The Genome Sequence of an Entomopathogenic Nematode Heterorhabditis bacteriophora. PLoS One. 2013 Jul 18;8(7):e69618. doi: 10.1371/journal.pone.0069618. Print 2013. 2013-07-18
A luminal breast cancer genome atlas: progress and barriers. J Steroid Biochem Mol Biol. 2007 Aug-Sep;106(1-5):125-9. Epub 2007 May 24. 2007-08-01
A map for sequence analysis of the Arabidopsis thaliana genome. Nat Genet. 1999 Jul;22(3):265-70. 1999-07-01
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature. 2001 Feb 15;409(6822):928-33. 2001-02-15
A map of human genome variation from population-scale sequencing Nature. 2010 Oct 28;467(7319):1050-1. 2010-10-28
A New Chicken Genome Assembly Provides Insight into Avian Genome Structure G3 (Bethesda). 2016 Nov 14. pii: g3.116.035923. doi: 10.1534/g3.116.035923. [Epub ahead of print] 2016-11-14
A new era in the genomics of bacteria. Curr Opin Microbiol. 2010 Oct;13(5):616-8. Epub 2010 Sep 16. 2010-10-01
A non-human primate system for large-scale genetic studies of complex traits. Hum Mol Genet. 2012 May 3. [Epub ahead of print] 2012-05-03
A Novel Intronic SNP in the Myosin heavy polypeptide 4 Gene Is Responsible for the Mini-Muscle Phenotype Characterized by Major Reduction in Hindlimb Muscle Mass in Mice. Genetics. 2013 Sep 20. [Epub ahead of print] 2013-09-20
A novel retinoblastoma therapy from genomic and epigenetic analyses. Nature. 2012 Jan 11. doi: 10.1038/nature10733. [Epub ahead of print] 2012-01-11
A nuclear single-nucleotide polymorphism (SNP) potentially useful for the separation of Rhodnius prolixus from members of the Rhodnius robustus cryptic species complex (Hemiptera: Reduviidae). Infect Genet Evol. 2012 Dec 5. pii: S1567-1348(12)00352-8. doi: 10.1016/j.meegid.2012.10.018. [Epub ahead of print] 2012-12-05
A phase 1 trial of BKM120 (Buparlisib) in combination with fulvestrant in postmenopausal women with estrogen receptor positive metastatic breast cancer. Clin Cancer Res. 2015 Nov 12. pii: clincanres.1745.2015. [Epub ahead of print] 2015-11-12
A physical map of the chicken genome. Nature. 2004 Dec 9;432(7018):679-80. 2004-12-09
A physical map of the human genome. Nature. 2001 Feb 15;409(6822):934-41. 2001-02-15
A physical map of the human Y chromosome. Nature. 2001 Feb 15;409(6822):943-5. 2001-02-15
A physical map of the mouse genome. Nature. 2002 Aug 15;418(6899):743-50. Epub 2002 Aug 04. 2002-08-15
A pilot study of high-throughput, sequence-based mutational profiling of primary human acute myeloid leukemia cell genomes. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14275-80. Epub 2003 Nov 12. 2003-11-25
A pneumatic device for rapid loading of DNA sequencing gels. Genome Res. 1998 May;8(5):543-8. 1998-05-01
A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing. Nucleic Acids Res. 2010 Sep;38(17):e171. doi: 10.1093/nar/gkq667. Epub 2010 Aug 3. 2010-09-01
A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis. Proc Natl Acad Sci U S A. 2009 May 26;106(21):8713-8. Epub 2009 May 13. 2009-05-26
A proposal to sequence the amphioxus genome submitted to the Joint Genome Institute of the US Department of Energy. J Exp Zoolog Part B Mol Dev Evol. 2003 Dec 15;300(1):5-22. 2003-12-15
A proposal to sequence the genome of a garter snake (Thamnophis sirtalis). Stand Genomic Sci. 2011 Apr 29;4(2):257-70. doi: 10.4056/sigs.1664145. 2011-04-29
A proteinaceous organic matrix regulates carbonate mineral production in the marine teleost intestine. Sci Rep. 2016 Oct 3;6:34494. doi: 10.1038/srep34494. 1970-08-22
A RAD-Tag Genetic Map for the Platyfish (Xiphophorus maculatus) Reveals Mechanisms of Karyotype Evolution Among Teleost Fish. Genetics. 2014 Apr 2;197(2):625-641. [Epub ahead of print] 2014-04-02
A region of the myosin rod important for interaction with paramyosin in Caenorhabditis elegans striated muscle. Genetics. 2000 Oct;156(2):631-43. 2000-10-01
A robust prognostic signature for hormone-positive node-negative breast cancer. Genome Med. 2013 Oct 11;5(10):92. [Epub ahead of print] 2013-10-11
A second generation human haplotype map of over 3.1 million SNPs. Nature. 2007 Oct 18;449(7164):851-61. 2007-10-18
A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome. Cell. 2008 Aug 22;134(4):599-609. doi: 10.1016/j.cell.2008.06.033. 2008-08-22
A SNP discovery method to assess variant allele probability from next-generation resequencing data. Genome Res. 2010 Feb;20(2):273-80. Epub 2009 Dec 17. 2009-12-17
A surprising cross-species conservation in the genomic landscape of mouse and human oral cancer identifies a transcriptional signature predicting metastatic disease. Clin Cancer Res. 2014 Mar 25. [Epub ahead of print] 2014-03-25
A survey of expressed genes in Caenorhabditis elegans. Nat Genet. 1992 May;1(2):114-23. 1992-05-01
A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans. Mol Genet Genomics. 2004 Sep;272(2):138-48. Epub 2004 Aug 28. 2004-09-01
A survey of the Leishmania major Friedlin strain V1 genome by shotgun sequencing: a resource for DNA microarrays and expression profiling. Mol Biochem Parasitol. 2001 Apr 6;113(2):337-40. 2001-04-06
A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics. Cell. 2014 Sep 11;158(6):1402-14. doi: 10.1016/j.cell.2014.08.032. 2014-09-11
A trace display and editing program for data from fluorescence based sequencing machines. Nucleic Acids Res. 1991 Dec 11;19(23):6481-3. 1991-12-11
A transcriptomic analysis of the phylum Nematoda Nat Genet. 2004 Dec;36(12):1259-67. Epub 2004 Dec. 2004-11-14
A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes. Genome Res. 1997 May;7(5):551-63. 1997-05-01
A Vaccine for Cancer? Sci Am. 2016 Apr;314(4):46. doi: 10.1038/scientificamerican0416-46 2016-04-01
A vertebrate case study of the quality of assemblies derived from next-generation sequences. Genome Biol. 2011 Mar 31;12(3):R31. [Epub ahead of print] 2011-03-31
A white paper on nematode comparative genomics. J Nematol. 2005 Dec;37(4):408-16. 2005-12-01
AACR Cancer Progress Report 2013. Clin Cancer Res. 2013 Oct 15;19(20 Suppl):S1-S98. doi: 10.1158/1078-0432.CCR-13-2107. Epub 2013 Sep 16. 2013-10-15
Abundant gene conversion between arms of palindromes in human and ape Y chromosomes. Nature. 2003 Jun 19;423(6942):873-6. 2003-06-01
Acquired copy number alterations in adult acute myeloid leukemia genomes. Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12950-5. Epub 2009 Jul 27. 2009-08-04
Activating HER2 Mutations in HER2 Gene Amplification Negative Breast Cancer. Cancer Discov. 2012 Dec 7. [Epub ahead of print] 2012-12-07
Activation of NFAT signaling establishes a tumorigenic microenvironment through cell autonomous and non-cell autonomous mechanisms. Oncogene. 2013 Apr 29. doi: 10.1038/onc.2013.132. [Epub ahead of print] 2013-04-29
Adjusting Family Relatedness in Data-driven Burden Test of Rare Variants. Genet Epidemiol. 2014 Dec;38(8):722-7. doi: 10.1002/gepi.21848. Epub 2014 Aug 28. 2014-12-01
Advances for studying clonal evolution in cancer. Cancer Lett. 2013 Jan 23. pii: S0304-3835(13)00034-7. doi: 10.1016/j.canlet.2012.12.028. [Epub ahead of print] 2013-01-23
Advances in genome biology and technology. Pharmacogenomics. 2004 Jun;5(4):355-6. 2004-06-01
Advances in the sequencing of the genome of the adenophorean nematode Trichinella spiralis. Parasitology. 2008 Jul;135(8):869-80. 2008-07-26
After the duplication: gene loss and adaptation in Saccharomyces genomes. Genetics. 2006 Feb;172(2):863-72. Epub 2005 Dec 1. 2006-02-17
Age-related mutations associated with clonal hematopoietic expansion and malignancies. Nat Med. 2014 Oct 19. doi: 10.1038/nm.3733. [Epub ahead of print] 2014-10-19
Alpha-gliadin genes from the A, B, and D genomes of wheat contain different sets of celiac disease epitopes. BMC Genomics. 2006 Jan 10;7:1. 2006-01-10
Alternative strategies for development of a reference transcriptome for quantification of allele specific expression in organisms having sparse genomic resources. Comp Biochem Physiol Part D Genomics Proteomics. 2013 Mar;8(1):11-6. doi: 10.1016/j.cbd.2012.10.006. Epub 2012 Nov 9. 2012-11-09
Alu and L1 sequence distributions in Xq24-q28 and their comparative utility in YAC contig assembly and verification. Genomics. 1993 May;16(2):417-25. 1993-05-01
Alzheimer's disease: rare variants with large effect sizes. Curr Opin Genet Dev. 2015 Aug 22;33:49-55. doi: 10.1016/j.gde.2015.07.008. [Epub ahead of print] 2015-08-22
An analysis of the sensitivity of proteogenomic mapping of somatic mutations and novel splicing events in cancer. Mol Cell Proteomics. 2015 Dec 2. pii: mcp.M115.056226. [Epub ahead of print] 2015-12-02
An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications. BMC Genomics. 2012;13 Suppl 7:S10. doi: 10.1186/1471-2164-13-S7-S10. Epub 2012 Dec 13. 2012-12-13
An encyclopedia of mouse genes. Nat Genet. 1999 Feb;21(2):191-4. 1999-02-01
An expressed sequence tag analysis of the life-cycle of the parasitic nematode Strongyloides ratti. Mol Biochem Parasitol. 2005 Jul;142(1):32-46. Epub 2005 Apr 18. 2005-07-01
An expression profile of human pancreatic islet mRNAs by Serial Analysis of Gene Expression (SAGE). Diabetologia. 2004 Feb;47(2):284-99. Epub 2004 Jan 13. 2004-02-01
An infrared fluorescent dATP for labeling DNA. Genome Res. 1995 Nov;5(4):393-9. 1995-11-01
An integrated map of genetic variation from 1,092 human genomes. Nature. 2012 Nov 1;491(7422):56-65. doi: 10.1038/nature11632. 2012-11-01
An integrated map of structural variation in 2,504 human genomes. Nature. 2015 Oct 1;526(7571):75-81. doi: 10.1038/nature15394. 2015-10-01
An integrated multi-omics approach to identify candidate antigens for serodiagnosis of human onchocerciasis. Mol Cell Proteomics. 2015 Oct 15. pii: mcp.M115.051953. [Epub ahead of print] 2015-12-01
An Inv(16)(p13.3q24.3)-Encoded CBFA2T3-GLIS2 Fusion Protein Defines an Aggressive Subtype of Pediatric Acute Megakaryoblastic Leukemia. Cancer Cell. 2012 Nov 13;22(5):683-97. doi: 10.1016/j.ccr.2012.10.007. 2012-11-13
An mRNA Gene Expression-Based Signature to Identify FGFR1-Amplified Estrogen Receptor-Positive Breast Tumors. J Mol Diagn. 2017 Jan;19(1):147-161. doi: 10.1016/j.jmoldx.2016.09.007. 2017-01-19
An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 2006 Dec 21;444(7122):1027-131. 2006-12-21
An oligonucleotide fingerprint normalized and expressed sequence tag characterized zebrafish cDNA library. Genome Res. 2001 Sep;11(9):1594-602. 2001-09-01
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res. 2007 Jun;17(6):760-74. 2007-06-17
Analysis and functional classification of transcripts from the nematode Meloidogyne incognita. Genome Biol. 2003;4(4):R26. Epub 2003 Mar 31. 2003-03-31
Analysis of next-generation genomic data in cancer: accomplishments and challenges. Hum Mol Genet. 2010 Oct 15;19(R2):R188-96. Epub 2010 Sep 15. 2010-10-15
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana Nature. 2000 Dec 14;408(6814):796-815. 2000-12-14
Analysis of the human neurexin genes: alternative splicing and the generation of protein diversity. Genomics. 2002 Apr;79(4):587-97. 2002-04-01
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach. BMC Genomics. 2006 Sep 29;7:246. 2006-09-29
Analysis of the transcriptome of adult Dictyocaulus filaria and comparison with Dictyocaulus viviparus, with a focus on molecules involved in host-parasite interactions. Int J Parasitol. 2014 Jan 30. pii: S0020-7519(14)00025-3. doi: 10.1016/j.ijpara.2013.12.003. [Epub ahead of print] 2014-01-30
Ancestral polyploidy in seed plants and angiosperms. Nature. 2011 May 5;473(7345):97-100. Epub 2011 Apr 10. 2011-04-10
Ancestry estimation and control of population stratification for sequence-based association studies. Nat Genet. 2014 Apr;46(4):409-15. doi: 10.1038/ng.2924. Epub 2014 Mar 16. 2014-04-01
Ancient conserved regions in new gene sequences and the protein databases. Science. 1993 Mar 19;259(5102):1711-6. 1993-03-19
Anticipating the 1,000 dollar genome. Genome Biol. 2006;7(7):112. 2006-07-06
Application of a superword array in genome assembly. Nucleic Acids Res. 2006 Jan 5;34(1):201-5. Print 2006. 2006-01-15
Application of Next-Generation Sequencing to Identify Genes and Mutations Causing Autosomal Dominant Retinitis Pigmentosa (adRP). Adv Exp Med Biol. 2014;801:123-9. doi: 10.1007/978-1-4614-3209-8_16. 2014-04-01
Application of Taxonomic Modeling to Microbiota Data Mining for Detection of Helminth Infection in Global Populations Data (Basel). 2016 Dec;1(3). pii: 19. doi: 10.3390/data1030019. Epub 2016 Dec 13. 1970-08-22
Applying next-generation sequencing to pancreatic cancer treatment. Nat Rev Gastroenterol Hepatol. 2012 Jul 3. doi: 10.1038/nrgastro.2012.126. [Epub ahead of print] 2012-07-03
Aromatase inhibition remodels the clonal architecture of estrogen-receptor-positive breast cancers Nat Commun. 2016 Aug 9;7:12498. doi: 10.1038/ncomms12498 2016-08-09
Aspects of coverage in medical DNA sequencing. BMC Bioinformatics. 2008 May 16;9:239. 2008-05-16
Assembly of body wall muscle and muscle cell attachment structures in Caenorhabditis elegans. J Cell Biol. 1994 Feb;124(4):491-506. 1994-02-01
Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data. Genome Biol. 2012 Dec 11;13(12):R113. [Epub ahead of print] 2012-12-11
Association between DQB1 and cervical cancer in patients with human papillomavirus and family controls. Obstet Gynecol. 2000 Jan;95(1):134-40. 2000-01-01
Association Between Mutation Clearance After Induction Therapy and Outcomes in Acute Myeloid Leukemia. JAMA. 2015 Aug 25;314(8):811-22. doi: 10.1001/jama.2015.9643. 2015-08-25
Association of age at diagnosis and genetic mutations in patients with neuroblastoma. JAMA. 2012 Mar 14;307(10):1062-71. 2012-03-14
Association of Somatic Mutations of ADAMTS Genes With Chemotherapy Sensitivity and Survival in High-Grade Serous Ovarian Carcinoma. JAMA Oncol. 2015 Jul 1;1(4):486-94. doi: 10.1001/jamaoncol.2015.1432. 2015-07-01
Assuring the quality of next-generation sequencing in clinical laboratory practice. Nat Biotechnol. 2012 Nov;30(11):1033-6. doi: 10.1038/nbt.2403. 2012-11-01
Astrovirus MLB2 Viremia in Febrile Child. Emerg Infect Dis. 2011 Nov;17(11):2050-2. 2011-11-29
ATRX in diffuse gliomas with its mosaic/heterogeneous expression in a subset Brain Pathol. 2016 Feb 2. doi: 10.1111/bpa.12364. [Epub ahead of print] 2016-02-02
Automated fluorescent DNA sequencing of polymerase chain reaction products. Methods Enzymol. 1993;218:104-21. 1993-01-01
Automated processing of raw DNA sequence data. IEEE Eng Med Biol Mag. 2001 Jul-Aug;20(4):41-8. 2001-07-31
Automated sequence preprocessing in a large-scale sequencing environment. Genome Res. 1998 Sep;8(9):975-84. 1998-09-01
Avian W and mammalian Y chromosomes convergently retained dosage-sensitive regulators. Nat Genet. 2017 Jan 30. doi: 10.1038/ng.3778. [Epub ahead of print] 1970-08-22
Background Mutations in Parental Cells Account for Most of the Genetic Heterogeneity of Induced Pluripotent Stem Cells. Cell Stem Cell. 2012 Apr 26. [Epub ahead of print] 2012-04-26
Bacterial communities of the coronal sulcus and distal urethra of adolescent males. PLoS One. 2012;7(5):e36298. Epub 2012 May 11. 2012-05-11
Basal vertebrates clarify the evolutionary history of ciliopathy-associated genes Tmem138 and Tmem216. Mol Biol Evol. 2012 Aug 30. [Epub ahead of print] 2012-08-30
Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998 Mar;8(3):175-85. 1998-02-28
Biogeography of the ecosystems of the healthy human body. Genome Biol. 2013 Jan 14;14(1):R1. [Epub ahead of print] 2013-01-14
Biology and genome of Trichinella spiralis. WormBook. 2006 Nov 23:1-21. 2006-11-23
Biome representational in silico karyotyping. Genome Res. 2011 Apr;21(4):626-33. Epub 2011 Feb 10. 2011-02-10
Bioweapons could kill more in one strike than guns. Nature. 2005 Sep 8;437(7056):192. 2005-09-08
Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes. Genome Res. 2008 Jun;18(6):965-73. Epub 2008 May 7. 2008-05-31
Blinded comparison of repetitive-sequence PCR and multilocus sequence typing for genotyping methicillin-resistant Staphylococcus aureus isolates from a children's hospital in St. Louis, Missouri. J Clin Microbiol. 2006 Jun;44(6):2254-7. 2006-06-01
Body Mass Index, PAM50 Subtype, and Outcomes in Node-Positive Breast Cancer: CALGB 9741 (Alliance). J Natl Cancer Inst. 2015 Jun 25;107(9). pii: djv179. doi: 10.1093/jnci/djv179. Print 2015 Sep. 2015-06-25
Bos taurus genome assembly. BMC Genomics. 2009 Apr 24;10(1):180. [Epub ahead of print] 2009-04-24
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat Methods. 2009 Sep;6(9):677-81. Epub 2009 Aug 9. 2009-09-06
BreakDancer: Identification of Genomic Structural Variation from Paired-End Read Mapping Curr. Protoc. Bioinform. 45:15.6.1-15.6.11. DOI: 10.1002/0471250953.bi1506s45 2014-03-21
BreakFusion: Targeted Assembly-based Identification of Gene Fusions in Whole Transcriptome Paired-end Sequencing Data. Bioinformatics. 2012 May 4. [Epub ahead of print] 2012-05-04
BreakTrans: uncovering the genomic architecture of gene fusions. Genome Biol. 2013 Aug 23;14(8):R87. [Epub ahead of print] 2013-08-23
Brugia malayi: effects of radiation and culture on gene expression in infective larvae. Mol Biochem Parasitol. 2006 Oct;149(2):201-7. Epub 2006 Jun 22. 2006-10-01
Brugia malayi: whole genome amplification for genomic characterization of filarial parasites. Exp Parasitol. 2008 Jun;119(2):256-63. Epub 2008 Feb 19. 2008-06-05
C11orf95-RELA fusions drive oncogenic NF-kappaB signalling in ependymoma. Nature. 2014 Feb 27;506(7489):451-5. doi: 10.1038/nature13109. Epub 2014 Feb 19. 2014-02-27
C11orf95-rela fusions drive oncogenic NF-kb signaling in ependymoma. Neuro Oncol. 2014 Jul;16 Suppl 3:iii16. doi: 10.1093/neuonc/nou206.57. 2014-07-01
Caenorhabditis elegans glp-4 Encodes a Valyl Aminoacyl tRNA Synthetase. G3 (Bethesda). 2015 Oct 13;5(12):2719-28. doi: 10.1534/g3.115.021899. 2015-10-13
California Dreamin': the Future of Genomic Medicine Cold Spring Harb Mol Case Stud. 2016 Mar;2(2):a000976. doi: 10.1101/mcs.a000976 2016-03-01
Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting. Nature. 2012 Feb 8 [Epub ahead of print]. 2012-02-08
Cancer genome sequencing and its implications for personalized cancer vaccines. Cancers (Basel). 2011 Nov 25;3(4):4191-211. doi: 10.3390/cancers3044191. 2011-11-25
Cancer genome sequencing: a review. Hum Mol Genet. 2009 Oct 15;18(R2):R163-8. 2009-10-04
Cancer genomics identifies determinants of tumor biology. Genome Biol. 2010 May 5;11(5):211. [Epub ahead of print] 2010-05-05
Cancer Genomics: Large-Scale Projects Translate into Therapeutic Advances PLoS Med. 2016 Dec 27;13(12):e1002209. doi: 10.1371/journal.pmed.1002209. eCollection 2016 2016-12-27
Cancer Progress Report 2014. Clin Cancer Res. 2014 Sep 16. pii: clincanres.2123.2014. [Epub ahead of print] 2014-09-14
Candidate Genes That May Be Responsible for the Unusual Resistances Exhibited by Bacillus pumilus SAFR-032 Spores. PLoS One. 2013 Jun 14;8(6):e66012. doi: 10.1371/journal.pone.0066012. Print 2013. 2013-06-14
Capillary electrophoresis platforms for DNA sequence analysis. J Biomol Tech. 1999 Sep;10(3):137-43. 1999-09-01
Caspase 9 is required for normal hematopoietic development and protection from alkylator-induced DNA damage in mice. Blood. 2014 Oct 27. pii: blood-2014-06-582551. [Epub ahead of print] 2014-10-27
cDNA Hybrid Capture Improves Transcriptome Analysis on Low-Input and Archived Samples. J Mol Diagn. 2014 May 8. pii: S1525-1578(14)00072-5. doi: 10.1016/j.jmoldx.2014.03.004. [Epub ahead of print] 2014-05-08
Challenges of sequencing human genomes. Brief Bioinform. 2010 Sep;11(5):484-98. Epub 2010 Jun 2. 2010-09-11
Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease. Sci Rep. 2016 Nov 9;6:36797. doi: 10.1038/srep36797. 2016-11-09
Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans. Genome Res. 2001 Aug;11(8):1346-52. 2001-08-01
Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection. PLoS One. 2010 Nov 24;5(11):e14116. 2010-11-24
Characterization of missing human genome sequences and copy-number polymorphic insertions. Nat Methods. 2010 May;7(5):365-71. 2010-05-01
Characterization of parasite-specific indels and their proposed relevance for selective anthelminthic drug targeting. Infect Genet Evol. 2016 Jan 29. pii: S1567-1348(16)30025-9. doi: 10.1016/j.meegid.2016.01.025. [Epub ahead of print] 2016-01-29
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