Publications

TGI Publications

title citation publication date
2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans. Nature. 1994 Mar 3;368(6466):32-8. 1994-03-03
400000 nematode ESTs on the Net. Trends Parasitol. 2003 Jul;19(7):283-6. 2003-06-01
A 50 Gene Intrinsic Subtype Classifier for Prognosis and Prediction of Benefit from Adjuvant Tamoxifen. Clin Cancer Res. 2012 Jun 18. [Epub ahead of print] 2012-06-18
A burst of segmental duplications in the genome of the African great ape ancestor. Nature. 2009 Feb 12;457(7231):877-81. 2009-02-12
A Catalog of Reference Genomes from the Human Microbiome. Science. 2010 May 21;328(5981):994-999. 2010-05-21
A comparison of PAM50 intrinsic subtyping with immunohistochemistry and clinical prognostic factors in tamoxifen-treated estrogen receptor-positive breast cancer. Clin Cancer Res. 2010 Nov 1;16(21):5222-32. Epub 2010 Sep 13. 2010-11-01
A compilation of soybean ESTs: generation and analysis. Genome. 2002 Apr;45(2):329-38. 2002-03-31
A complete BAC-based physical map of the Arabidopsis thaliana genome. Nat Genet. 1999 Jul;22(3):271-5. 1999-06-01
A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS One. 2012;7(6):e34242. doi: 10.1371/journal.pone.0034242. Epub 2012 Jun 13. 2012-06-13
A decade’s perspective on DNA sequencing technology Nature. 2011 Feb 10;470(7333):198-203. 2011-02-10
A dominant mutation in RPE65 identified by whole-exome sequencing causes retinitis pigmentosa with choroidal involvement. Eur J Hum Genet. 2011 Jun 8. doi: 10.1038/ejhg.2011.86. [Epub ahead of print] 2011-06-08
A framework for human microbiome research. Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209. 2012-06-13
A general approach to single-nucleotide polymorphism discovery. Nat Genet. 1999 Dec;23(4):452-6. 1999-12-01
A general coverage theory for shotgun DNA sequencing. J Comput Biol. 2006 Jul-Aug;13(6):1177-96. 2006-08-08
A genetic mapping system in Caenorhabditis elegans based on polymorphic sequence-tagged sites. Genetics. 1992 Jul;131(3):609-24. 1992-07-01
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature. 2004 Dec 9;432(7018):717-22. 2004-12-09
A genome-wide comparison of recent chimpanzee and human segmental duplications. Nature. 2005 Sep 1;437(7055):88-93. 2005-09-15
A high-resolution map of human evolutionary constraint using 29 mammals. Nature. 2011 Oct 12;478(7370):476-82. doi: 10.1038/nature10530. 2011-10-12
A human genome structural variation sequencing resource reveals insights into mutational mechanisms. Cell. 2010 Nov 24;143(5):837-47. 2010-11-24
A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk. Nat Genet. 2010 Sep;42(9):745-50. Epub 2010 Aug 22. 2010-09-01
A map for sequence analysis of the Arabidopsis thaliana genome. Nat Genet. 1999 Jul;22(3):265-70. 1999-07-01
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature. 2001 Feb 15;409(6822):928-33. 2001-02-15
A map of human genome variation from population-scale sequencing Nature. 2010 Oct 28;467(7319):1050-1. 2010-10-28
A new era in the genomics of bacteria. Curr Opin Microbiol. 2010 Oct;13(5):616-8. Epub 2010 Sep 16. 2010-10-01
A non-human primate system for large-scale genetic studies of complex traits. Hum Mol Genet. 2012 May 3. [Epub ahead of print] 2012-05-03
A novel retinoblastoma therapy from genomic and epigenetic analyses. Nature. 2012 Jan 11. doi: 10.1038/nature10733. [Epub ahead of print] 2012-01-11
A nuclear single-nucleotide polymorphism (SNP) potentially useful for the separation of Rhodnius prolixus from members of the Rhodnius robustus cryptic species complex (Hemiptera: Reduviidae). Infect Genet Evol. 2012 Dec 5. pii: S1567-1348(12)00352-8. doi: 10.1016/j.meegid.2012.10.018. [Epub ahead of print] 2012-12-05
A physical map of the chicken genome. Nature. 2004 Dec 9;432(7018):679-80. 2004-12-09
A physical map of the human genome. Nature. 2001 Feb 15;409(6822):934-41. 2001-02-15
A physical map of the human Y chromosome. Nature. 2001 Feb 15;409(6822):943-5. 2001-02-15
A physical map of the mouse genome. Nature. 2002 Aug 15;418(6899):743-50. Epub 2002 Aug 04. 2002-08-15
A pilot study of high-throughput, sequence-based mutational profiling of primary human acute myeloid leukemia cell genomes. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14275-80. Epub 2003 Nov 12. 2003-11-25
A pneumatic device for rapid loading of DNA sequencing gels. Genome Res. 1998 May;8(5):543-8. 1998-04-30
A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis. Proc Natl Acad Sci U S A. 2009 May 26;106(21):8713-8. Epub 2009 May 13. 2009-05-26
A proposal to sequence the amphioxus genome submitted to the Joint Genome Institute of the US Department of Energy. J Exp Zoolog Part B Mol Dev Evol. 2003 Dec 15;300(1):5-22. 2003-12-15
A region of the myosin rod important for interaction with paramyosin in Caenorhabditis elegans striated muscle. Genetics. 2000 Oct;156(2):631-43. 2000-10-01
A second generation human haplotype map of over 3.1 million SNPs. Nature. 2007 Oct 18;449(7164):851-61. 2007-10-18
A SNP discovery method to assess variant allele probability from next-generation resequencing data. Genome Res. 2010 Feb;20(2):273-80. Epub 2009 Dec 17. 2009-12-17
A survey of expressed genes in Caenorhabditis elegans. Nat Genet. 1992 May;1(2):114-23. 1992-05-01
A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans. Mol Genet Genomics. 2004 Sep;272(2):138-48. Epub 2004 Aug 28. 2004-09-01
A survey of the Leishmania major Friedlin strain V1 genome by shotgun sequencing: a resource for DNA microarrays and expression profiling. Mol Biochem Parasitol. 2001 Apr 6;113(2):337-40. 2001-04-06
A trace display and editing program for data from fluorescence based sequencing machines. Nucleic Acids Res. 1991 Dec 11;19(23):6481-3. 1991-12-11
A transcriptomic analysis of the phylum Nematoda Nat Genet. 2004 Dec;36(12):1259-67. Epub 2004 Dec. 2004-11-14
A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes. Genome Res. 1997 May;7(5):551-63. 1997-05-01
A vertebrate case study of the quality of assemblies derived from next-generation sequences. Genome Biol. 2011 Mar 31;12(3):R31. [Epub ahead of print] 2011-03-31
Abundant gene conversion between arms of palindromes in human and ape Y chromosomes. Nature. 2003 Jun 19;423(6942):873-6. 2003-06-01
Acquired copy number alterations in adult acute myeloid leukemia genomes. Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12950-5. Epub 2009 Jul 27. 2009-08-04
Activating HER2 Mutations in HER2 Gene Amplification Negative Breast Cancer. Cancer Discov. 2012 Dec 7. [Epub ahead of print] 2012-12-07
Advances for studying clonal evolution in cancer. Cancer Lett. 2013 Jan 23. pii: S0304-3835(13)00034-7. doi: 10.1016/j.canlet.2012.12.028. [Epub ahead of print] 2013-01-23
Advances in genome biology and technology. Pharmacogenomics. 2004 Jun;5(4):355-6. 2004-06-01
Advances in the sequencing of the genome of the adenophorean nematode Trichinella spiralis. Parasitology. 2008 Jul;135(8):869-80. 2008-07-26
After the duplication: gene loss and adaptation in Saccharomyces genomes. Genetics. 2006 Feb;172(2):863-72. Epub 2005 Dec 1. 2006-02-17
Alternative strategies for development of a reference transcriptome for quantification of allele specific expression in organisms having sparse genomic resources. Comp Biochem Physiol Part D Genomics Proteomics. 2013 Mar;8(1):11-6. doi: 10.1016/j.cbd.2012.10.006. Epub 2012 Nov 9. 2012-11-09
Alu and L1 sequence distributions in Xq24-q28 and their comparative utility in YAC contig assembly and verification. Genomics. 1993 May;16(2):417-25. 1993-05-01
An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications. BMC Genomics. 2012;13 Suppl 7:S10. doi: 10.1186/1471-2164-13-S7-S10. Epub 2012 Dec 13. 2012-12-13
An encyclopedia of mouse genes. Nat Genet. 1999 Feb;21(2):191-4. 1999-02-01
An expression profile of human pancreatic islet mRNAs by Serial Analysis of Gene Expression (SAGE). Diabetologia. 2004 Feb;47(2):284-99. Epub 2004 Jan 13. 2004-02-01
An infrared fluorescent dATP for labeling DNA. Genome Res. 1995 Nov;5(4):393-9. 1995-11-01
An integrated map of genetic variation from 1,092 human genomes. Nature. 2012 Nov 1;491(7422):56-65. doi: 10.1038/nature11632. 2012-11-01
An Inv(16)(p13.3q24.3)-Encoded CBFA2T3-GLIS2 Fusion Protein Defines an Aggressive Subtype of Pediatric Acute Megakaryoblastic Leukemia. Cancer Cell. 2012 Nov 13;22(5):683-97. doi: 10.1016/j.ccr.2012.10.007. 2012-11-13
An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 2006 Dec 21;444(7122):1027-131. 2006-12-21
An oligonucleotide fingerprint normalized and expressed sequence tag characterized zebrafish cDNA library. Genome Res. 2001 Sep;11(9):1594-602. 2001-09-01
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res. 2007 Jun;17(6):760-74. 2007-06-17
Analysis and functional classification of transcripts from the nematode Meloidogyne incognita. Genome Biol. 2003;4(4):R26. Epub 2003 Mar 31. 2003-03-31
Analysis of next-generation genomic data in cancer: accomplishments and challenges. Hum Mol Genet. 2010 Oct 15;19(R2):R188-96. Epub 2010 Sep 15. 2010-10-15
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana Nature. 2000 Dec 14;408(6814):796-815. 2000-12-14
Analysis of the human neurexin genes: alternative splicing and the generation of protein diversity. Genomics. 2002 Apr;79(4):587-97. 2002-04-01
Ancestral polyploidy in seed plants and angiosperms. Nature. 2011 May 5;473(7345):97-100. Epub 2011 Apr 10. 2011-04-10
Ancient conserved regions in new gene sequences and the protein databases. Science. 1993 Mar 19;259(5102):1711-6. 1993-03-19
Anticipating the 1,000 dollar genome. Genome Biol. 2006;7(7):112. 2006-07-06
Application of a superword array in genome assembly. Nucleic Acids Res. 2006 Jan 5;34(1):201-5. Print 2006. 2006-01-15
Applying next-generation sequencing to pancreatic cancer treatment. Nat Rev Gastroenterol Hepatol. 2012 Jul 3. doi: 10.1038/nrgastro.2012.126. [Epub ahead of print] 2012-07-03
Aspects of coverage in medical DNA sequencing. BMC Bioinformatics. 2008 May 16;9:239. 2008-05-16
Assembly of body wall muscle and muscle cell attachment structures in Caenorhabditis elegans. J Cell Biol. 1994 Feb;124(4):491-506. 1994-02-01
Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data. Genome Biol. 2012 Dec 11;13(12):R113. [Epub ahead of print] 2012-12-11
Association between DQB1 and cervical cancer in patients with human papillomavirus and family controls. Obstet Gynecol. 2000 Jan;95(1):134-40. 1998-01-01
Association of age at diagnosis and genetic mutations in patients with neuroblastoma. JAMA. 2012 Mar 14;307(10):1062-71. 2012-03-14
Astrovirus MLB2 Viremia in Febrile Child. Emerg Infect Dis. 2011 Nov;17(11):2050-2. 2011-11-29
Automated fluorescent DNA sequencing of polymerase chain reaction products. Methods Enzymol. 1993;218:104-21. 1992-01-01
Automated processing of raw DNA sequence data. IEEE Eng Med Biol Mag. 2001 Jul-Aug;20(4):41-8. 2001-07-31
Automated sequence preprocessing in a large-scale sequencing environment. Genome Res. 1998 Sep;8(9):975-84. 1998-09-01
Background Mutations in Parental Cells Account for Most of the Genetic Heterogeneity of Induced Pluripotent Stem Cells. Cell Stem Cell. 2012 Apr 26. [Epub ahead of print] 2012-04-26
Bacterial communities of the coronal sulcus and distal urethra of adolescent males. PLoS One. 2012;7(5):e36298. Epub 2012 May 11. 2012-05-11
Basal vertebrates clarify the evolutionary history of ciliopathy-associated genes Tmem138 and Tmem216. Mol Biol Evol. 2012 Aug 30. [Epub ahead of print] 2012-08-30
Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998 Mar;8(3):175-85. 1998-02-28
Biogeography of the ecosystems of the healthy human body. Genome Biol. 2013 Jan 14;14(1):R1. [Epub ahead of print] 2013-01-14
Biome representational in silico karyotyping. Genome Res. 2011 Apr;21(4):626-33. Epub 2011 Feb 10. 2011-02-10
Bioweapons could kill more in one strike than guns. Nature. 2005 Sep 8;437(7056):192. 2005-09-08
Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes. Genome Res. 2008 Jun;18(6):965-73. Epub 2008 May 7. 2008-05-31
Bos taurus genome assembly. BMC Genomics. 2009 Apr 24;10(1):180. [Epub ahead of print] 2009-04-24
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat Methods. 2009 Sep;6(9):677-81. Epub 2009 Aug 9. 2009-09-06
BreakFusion: Targeted Assembly-based Identification of Gene Fusions in Whole Transcriptome Paired-end Sequencing Data. Bioinformatics. 2012 May 4. [Epub ahead of print] 2012-05-04
Brugia malayi: whole genome amplification for genomic characterization of filarial parasites. Exp Parasitol. 2008 Jun;119(2):256-63. Epub 2008 Feb 19. 2008-06-05
Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting. Nature. 2012 Feb 8 [Epub ahead of print]. 2012-02-08
Cancer genome sequencing: a review. Hum Mol Genet. 2009 Oct 15;18(R2):R163-8. 2009-10-04
Cancer genomics identifies determinants of tumor biology. Genome Biol. 2010 May 5;11(5):211. [Epub ahead of print] 2010-05-05
Challenges of sequencing human genomes. Brief Bioinform. 2010 Sep;11(5):484-98. Epub 2010 Jun 2. 2010-09-11
Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans. Genome Res. 2001 Aug;11(8):1346-52. 2001-08-01
Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection. PLoS One. 2010 Nov 24;5(11):e14116. 2010-11-24
Characterization of missing human genome sequences and copy-number polymorphic insertions. Nat Methods. 2010 May;7(5):365-71. 2010-05-01
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5859-64. Epub 2009 Mar 24. 2009-03-24
Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation. BMC Genomics. 2010 May 14;11:307. 2010-05-14
Characterizing the cancer genome in lung adenocarcinoma. Nature. 2007 Nov 4; [Epub ahead of print] 2007-11-04
ChimeraScan: a tool for identifying chimeric transcription in sequencing data. Bioinformatics. 2011 Oct 15;27(20):2903-4. doi: 10.1093/bioinformatics/btr467. Epub 2011 Aug 11. 2011-10-15
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res. 2011 Mar;21(3):494-504. Epub 2011 Jan 6. 2011-01-06
Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content. Nature. 2010 Jan 28;463(7280):536-9. Epub 2010 Jan 13. 2010-01-13
ChIP-seq: welcome to the new frontier. Nat Methods. 2007 Aug;4(8):613-4. 2007-08-04
Chromothripsis and human disease: piecing together the shattering process. Cell. 2012 Jan 20;148(1-2):29-32. 2012-01-20
Clonal Architecture of Secondary Acute Myeloid Leukemia. N Engl J Med. 2012 Mar 22;366(12):1090-8. doi: 10.1056/NEJMoa1106968. Epub 2012 Mar 14. 2012-03-14
Clonal diversity of recurrently mutated genes in myelodysplastic syndromes. Leukemia. 2013 Feb 27. doi: 10.1038/leu.2013.58. [Epub ahead of print] 2013-02-27
Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing. Nature. 2012 Jan 11. doi: 10.1038/nature10738. [Epub ahead of print] 2012-01-11
Cloning, sequencing, and mapping of an alpha-actinin gene from the nematode Caenorhabditis elegans. Cell Motil Cytoskeleton. 1991;20(1):69-78. 1991-01-01
Cluster analysis of genome-wide expression differences in disease-unaffected ileal mucosa in inflammatory bowel diseases. 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), pp 220-225. 2011. 2011-02-03
CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data. Bioinformatics. 2009 Dec 23. [Epub ahead of print] 2009-12-23
Co-survival of the fittest few: mosaic amplification of receptor tyrosine kinases in glioblastoma. Genome Biol. 2012 Jan 30;13(1):141. [Epub ahead of print] 2012-01-30
Collision probability between sets of random variables. Statistics & Probability Letters, Volume 64, Issue 3, 15 September 2003, Pages 249-254. 2003-09-15
Comparative Analysis and Functional Annotation of a Large Expressed Sequence Tag Collection of Apple. The Plant Genome. 2009 March:2:23-38. 2009-03-01
Comparative analysis of the polycystic kidney disease 1 (PKD1) gene reveals an integral membrane glycoprotein with multiple evolutionary conserved domains. Hum Mol Genet. 1997 Sep;6(9):1483-9. 1997-09-01
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res. 2008 Apr;18(4):571-84. Epub 2008 Mar 6. 2008-04-10
Comparative and demographic analysis of orang-utan genomes Nature. 2011 Jan 27;469(7331):529-33. 2011-01-27
Comparative genomic analysis of the zebra finch degradome provides new insights into evolution of proteases in birds and mammals. BMC Genomics. 2010 Apr 1;11:220. 2010-04-01
Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes. Proc Natl Acad Sci U S A. 2000 Feb 1;97(3):1172-7. 2000-02-01
Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Mol Ecol. 2010 Mar;19 Suppl 1:266-76. 2010-03-19
Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans. Genome Res. 2004 Feb;14(2):209-20. 2004-02-01
Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. Genome Res. 2005 Apr;15(4):496-504. 2005-04-18
Comparison of C. elegans and C. briggsae Genome Sequences Reveals Extensive Conservation of Chromosome Organization and Synteny. PLoS Biol. 2007 Jul 3;5(7):e167 [Epub ahead of print] 2007-07-03
Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid Nat Genet. 2004 Dec;36(12):1268-74. Epub 2004 Dec. 2004-11-07
Comparison of sample sequences of the Salmonella typhi genome to the sequence of the complete Escherichia coli K-12 genome. Infect Immun. 1998 Sep;66(9):4305-12 1998-09-01
Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi. Nucleic Acids Res. 2000 Dec 15;28(24):4974-86. 2000-12-15
Comparison of the Respiratory Microbiome in Healthy Non-Smokers and Smokers. Am J Respir Crit Care Med. 2013 Mar 14. [Epub ahead of print] 2013-03-14
Comparison of whole genome assemblies of the human genome. Nucleic Acids Res. 2002 Nov 15;30(22):5004-14. 2002-11-15
Comparisons among two fertile and three male-sterile mitochondrial genomes of maize. Genetics. 2007 Oct;177(2):1173-92. Epub 2007 Jul 29. 2007-10-17
Complete characterization of the microRNAome in a patient with acute myeloid leukemia. Blood. 2010 Dec 9;116(24):5316-26. Epub 2010 Sep 28. 2010-12-09
Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes. BMC Microbiol. 2012 Jul 7;12(1):135. [Epub ahead of print] 2012-07-07
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature. 2001 Oct 25;413(6858):852-6. 2001-10-25
Complete genome sequence of Treponema pallidum strain DAL-1. Stand Genomic Sci. 2012 Oct 10;7(1):12-21. doi: 10.4056/sigs.2615838. Epub 2012 Sep 24. 2012-09-24
Complete Genome Sequence of Treponema paraluiscuniculi, Strain Cuniculi A: The Loss of Infectivity to Humans Is Associated with Genome Decay. PLoS One. 2011;6(5):e20415. Epub 2011 May 31. 2011-05-31
Complete Haplotype Sequence of the Human Immunoglobulin Heavy-Chain Variable, Diversity, and Joining Genes and Characterization of Allelic and Copy-Number Variation. Am J Hum Genet. 2013 Mar 26. pii: S0002-9297(13)00112-2. doi: 10.1016/j.ajhg.2013.03.004. [Epub ahead of print] 2013-03-26
Complete Khoisan and Bantu genomes from southern Africa. Nature. 2010 Feb 18;463(7283):943-7. 2010-02-18
Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. Science. 1994 Sep 30;265(5181):2077-82. 1994-09-01
Comprehensive genetic variant discovery in the surfactant protein B gene. Pediatr Res. 2007 Aug;62(2):170-5. 2007-08-12
Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature. 2008 Oct 23;455(7216):1061-8. Epub 2008 Sep 4. 2008-10-23
Comprehensive genomic characterization of squamous cell lung cancers Nature. 2012 Sep 9. doi: 10.1038/nature11404. [Epub ahead of print] 2012-09-09
Comprehensive genomic studies: emerging regulatory, strategic, and quality assurance challenges for biorepositories. Am J Clin Pathol. 2012 Jul;138(1):31-41. 2012-07-01
Comprehensive molecular characterization of human colon and rectal cancer. Nature. 2012 Jul 18;487(7407):330-7. doi: 10.1038/nature11252. 2012-07-18
Comprehensive molecular portraits of human breast tumours. Nature. 2012 Sep 23. doi: 10.1038/nature11412. [Epub ahead of print] 2012-09-23
Conifers have a unique small RNA silencing signature. RNA. 2008 Aug;14(8):1508-15. Epub 2008 Jun 19. 2008-08-01
Conservation and novelty in the evolution of cell adhesion and extracellular matrix genes. Science. 2000 Feb 11;287(5455):989-94. 2000-02-11
Conservation of Ebp-type Pilus Genes among Enterococci and Demonstration of Their Role in Adherence of Enterococcus faecalis to Human Platelets. Infect Immun. 2011 Jul;79(7):2911-20. Epub 2011 Apr 18. 2011-04-18
Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee. Nature. 2005 Sep 1;437(7055):100-3. 2005-09-01
Contribution of genetically restricted, methicillin-susceptible strains to the on-going epidemic of community-acquired Staphylococcus aureus infections. Clin Infect Dis. 2009 Aug 15;49(4):536-42. 2009-08-15
Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition. Nature. 2010 Jul 11. [Epub ahead of print] 2010-07-11
Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens' theorem. J Math Biol. 2012 Sep 11. [Epub ahead of print] 2012-09-11
CREST maps somatic structural variation in cancer genomes with base-pair resolution. Nat Methods. 2011 Jun 12. doi: 10.1038/nmeth.1628. [Epub ahead of print] 2011-06-12
De novo gene disruptions in children on the autistic spectrum. Neuron. 2012 Apr 26;74(2):285-99. 2012-04-26
De novo sequence assembly of a filamentious fungus using Sanger, 454 and Illumina sequence data. Genome Biol. 2009;10(9):R94. Epub 2009 Sep 11 2009-09-11
Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention. Biotechnol Adv. 2010 Dec 22. 2010-12-22
Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles. Genome Res. 2011 Jun 17. [Epub ahead of print] 2011-06-17
Defensins and the convergent evolution of platypus and reptile venom genes. Genome Res. 2008 Jun;18(6):986-94. Epub 2008 May 7. 2008-06-12
Demographic history and rare allele sharing among human populations. Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):11983-11988. Epub 2011 Jul 5. 2011-07-19
Design and implementation of a generalized laboratory data model. BMC Bioinformatics. 2007 Sep 26;8(1):362 [Epub ahead of print] 2007-09-26
Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genet. 2009 Nov;5(11):e1000728. Epub 2009 Nov 20. 2009-11-20
Detection of Viruses in Young Children With Fever Without an Apparent Source Pediatrics. 2012 Nov 5. [Epub ahead of print] 2012-11-05
Development and analysis of a germline BAC resource for the sea lamprey, a vertebrate that undergoes substantial chromatin diminution. Chromosoma. 2010 Aug;119(4):381-9. Epub 2010 Mar 2. 2010-08-02
Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe. 2008 Apr 17;3(4):213-23. 2008-04-08
Distinct patterns of mutations occurring in de novo AML versus AML arising in the setting of severe congenital neutropenia. Blood. 2007 Sep 1;110(5):1648-55. Epub 2007 May 9. 2007-05-10
Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycine. Genome Biol. 2007 Oct 5;8(10):R211 [Epub ahead of print] 2007-10-05
Diversity of human copy number variation and multicopy genes. Science. 2010 Oct 29;330(6004):641-6. 2010-10-29
DNA sequence chromatogram browsing using JAVA and CORBA. Genome Res. 1999 Mar;9(3):277-81. 1999-02-28
DNA sequencing of a cytogenetically normal acute myeloid leukaemia (AML) genome. Nature. 2008 Nov 6;456(7218):66-72. 2008-11-06
DNMT3A Mutations in Acute Myeloid Leukemia N Engl J Med. 2010 Nov 10. 2010-11-10
Draft genome of the filarial nematode parasite Brugia malayi. Science. 2007 Sep 21;317(5845):1756-60. 2007-09-21
EAnnot: a genome annotation tool using experimental evidence. Genome Res. 2004 Dec;14(12):2503-9. 2004-12-14
Effect of Crohn’s Disease Risk Alleles on Enteric Microbiota Marker Paper Nature Precedings doi:10.1038/npre.2010.4975.1, 2010 Oct 12. 2010-10-12
Effects of Doxycycline on gene expression in Wolbachia and Brugia malayi adult female worms in vivo. J Biomed Sci. 2012 Feb 9;19(1):21. [Epub ahead of print] 2012-02-09
EGF receptor gene mutations are common in lung cancers from "never smokers" and are associated with sensitivity of tumors to gefitinib and erlotinib. Proc Natl Acad Sci U S A. 2004 Sep 7;101(36):13306-11. 2004-09-07
Emerging view of the human virome. Transl Res. 2012 Apr 24. [Epub ahead of print] 2012-04-24
End sequence determination from large insert clones using energy transfer fluorescent primers. Genome Res. 1996 Nov;6(11):1118-22. 1996-11-01
Enteric defensins are essential regulators of intestinal microbial ecology. Nat Immunol. 2010 Jan;11(1):76-83. Epub 2009 Oct 22. 2009-10-22
Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research PLoS One. 2012;7(6):e39315. Epub 2012 Jun 13. 2012-06-13
Evolution of genes and genomes on the Drosophila phylogeny. Nature. 2007 Nov 8;450(7167):203-218. 2007-11-08
Evolution of Human-Specific Neural SRGAP2 Genes by Incomplete Segmental Duplication. Cell. 2012 May 2. [Epub ahead of print] 2012-05-02
Evolution of symbiotic bacteria in the distal human intestine. PLoS Biol. 2007 Jul;5(7):e156. Epub 2007 Jun 19. 2007-06-19
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 2005 Jul 15; 2005-07-15
Evolutionary and biomedical insights from the rhesus macaque genome. Science. 2007 Apr 13;316(5822):222-34. 2007-04-13
Evolutionary Genomics of Salmonella enterica Subspecies. MBio. 2013 Apr 2;4(2). pii: e00198-13. doi: 10.1128/mBio.00198-13. 2013-04-02
Evolutionary toggling of the MAPT 17q21.31 inversion region. Nat Genet. 2008 Aug 10. [Epub ahead of print] 2008-08-10
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