This server runs WU-BLAST 2.0.
All sequence is deposited nightly with the NCBI, which maintains a bigger BLAST server.
All reads are submitted nightly to the Trace Archive at NCBI.
Select a BLAST type to use on this query: BLASTN (DNA query sequence) TBLASTN (Protein query sequence)
Select a database to search against: Actinomyces_odontolyticus-1.0 (contigs) Actinomyces_odontolyticus-2.0.1 (contigs) Actinomyces_odontolyticus-2.0.1 (supercontigs) Alistipes_putredinis-2.0 (contigs) Alistipes_putredinis-2.0 (supercontigs) Alistipes_putredinis-2.0.1 (contigs) Alistipes_putredinis-2.0.1 (supercontigs) Alternaria_brassicicola-1.0 (contigs) Anaerofustis_stercorihominis-2.0 (contigs) Anaerofustis_stercorihominis-2.0 (supercontigs) Anaerofustis_stercorihominis-2.0.1 (contigs) Anaerofustis_stercorihominis-2.0.1 (supercontigs) Anaerostipes_caccae-4.0 (contigs) Anaerostipes_caccae-4.0 (supercontigs) Anaerostipes_caccae-4.0.1 (contigs) Anaerostipes_caccae-4.0.1 (supercontigs) Anaerotruncus_colihominis-0.2 (contigs) Anaerotruncus_colihominis-0.2 (supercontigs) Anaerotruncus_colihominis-0.2.1 (contigs) Anaerotruncus_colihominis-0.2.1 (supercontigs) Anopheles_gambiae_M-3.0 (contigs) Anopheles_gambiae_M-3.0 (supercontigs) Anopheles_gambiae_S-4.2 (contigs) Anopheles_gambiae_S-4.2 (supercontigs) Bacteroides_caccae-1.0 (contigs) Bacteroides_caccae-4.0.1 (contigs) Bacteroides_caccae-4.0.1 (supercontigs) Bacteroides_capillosus-1.0 (contigs) Bacteroides_capillosus-1.0 (supercontigs) Bacteroides_capillosus-2.0.1 (contigs) Bacteroides_capillosus-2.0.1 (supercontigs) Bacteroides_coprocola-2.0 (contigs) Bacteroides_coprocola-2.0 (supercontigs) Bacteroides_coprocola-2.0.1 (contigs) Bacteroides_coprocola-2.0.1 (supercontigs) Bacteroides_distasonis-1.0 (contigs) Bacteroides_intestinalis-2.0 (contigs) Bacteroides_intestinalis-2.0 (supercontigs) Bacteroides_intestinalis-2.0.1 (contigs) Bacteroides_intestinalis-2.0.1 (supercontigs) Bacteroides_ovatus-1.0 (contigs) Bacteroides_ovatus-2.0.1 (contigs) Bacteroides_ovatus-2.0.1 (supercontigs) Bacteroides_stercoris-2.0 (contigs) Bacteroides_stercoris-2.0 (supercontigs) Bacteroides_stercoris-2.0.1 (contigs) Bacteroides_stercoris-2.0.1 (supercontigs) Bacteroides_thetaiotaomicron_3731-1.0 (contigs) Bacteroides_thetaiotaomicron_3731-3.0 (contigs) Bacteroides_thetaiotaomicron_3731-4.0 (contigs) Bacteroides_thetaiotaomicron_7330-3.0 (contigs) Bacteroides_thetaiotaomicron_7330-3.0 (supercontigs) Bacteroides_thetaiotaomicron_7330-4.0 (contigs) Bacteroides_thetaiotaomicron_7330-4.0 (supercontigs) Bacteroides_thetaiotaomicron_7330-5.0 (contigs) Bacteroides_thetaiotaomicron_7330-5.0 (supercontigs) Bacteroides_thetaiotaomicron_7330-6.0 (contigs) Bacteroides_uniformis-2.0 (contigs) Bacteroides_uniformis-3.0.1 (contigs) Bacteroides_uniformis-3.0.1 (supercontigs) Bacteroides_vulgatus-1.0 (contigs) Bacteroids_novel_WH2-2.0 (contigs) Bacteroids_novel_WH2-5.0 (contigs) Bacteroids_novel_WH2-5.0 (supercontigs) Bacteroids_novel_WH2-6.0 (contigs) Bifidobacterium_adolescentis-1.0 (contigs) Bifidobacterium_adolescentis-1.0.1 (contigs) Bifidobacterium_adolescentis-1.0.1 (supercontigs) Bifidobacterium_dentium-2.0 (contigs) Bifidobacterium_dentium-2.0 (supercontigs) Bifidobacterium_dentium-2.0.1 (contigs) Bifidobacterium_dentium-2.0.1 (supercontigs) Blastomyces_dermatitidis EST (Myc_3730) Blastomyces_dermatitidis EST (Myc_454) Blastomyces_dermatitidis EST (Yst_3730) Blastomyces_dermatitidis EST (Yst_454) Blastomyces_dermatitidis-3.0 (contigs) Blastomyces_dermatitidis-3.0 (supercontigs) Blastomyces_dermatitidis-7.2 (contigs) Blastomyces_dermatitidis-7.2 (supercontigs) Caenorhabditis_brenneri (fosmid_ends) Caenorhabditis_brenneri(PB2801)-4.0 (contigs) Caenorhabditis_brenneri(PB2801)-4.0 (reads.unplaced) Caenorhabditis_brenneri(PB2801)-6.0.1 (contigs) Caenorhabditis_briggsae-1.0 (Cb3) (chromosomes) Caenorhabditis_japonica (fosmid_ends) Caenorhabditis_japonica-3.0.2 (contigs) Caenorhabditis_japonica-3.0.2 (supercontigs) Caenorhabditis_remanei-1.0 (contigs) Caenorhabditis_remanei-1.0 (reads.unplaced) Caenorhabditis_remanei-15.0.1 (contigs) Caenorhabditis_remanei-15.0.1 (supercontigs) Caenorhabditis_remanei-15.0.1 (reads.unplaced) Callithrix_jacchus (bac_ends) Callithrix_jacchus-2.0.1 (contigs) Callithrix_jacchus-2.0.1 (supercontigs) Callithrix_jacchus-2.0.2 (contigs) Callithrix_jacchus-2.0.2 (supercontigs) Callithrix_jacchus-2.0.2 (reads.unplaced) Callithrix_jacchus-2.0.2 (removed_data) Choloepus_hoffmanni-1.0 (contigs) Choloepus_hoffmanni-1.0 (supercontigs) Citrobacter_diversus-2.0 (contigs) Citrobacter_diversus-2.0 (supercontigs) Citrobacter_diversus-3.0 (contigs) Citrobacter_diversus-3.0 (supercontigs) Clostridium_bartlettii-2.0.1 (contigs) Clostridium_bartlettii-2.0.1 (supercontigs) Clostridium_bolteae-3.0 (contigs) Clostridium_bolteae-3.0 (supercontigs) Clostridium_bolteae-3.0.1 (contigs) Clostridium_bolteae-3.0.1 (supercontigs) Clostridium_leptum-3.0 (contigs) Clostridium_leptum-3.0 (supercontigs) Clostridium_leptum-3.0.1 (contigs) Clostridium_leptum-3.0.1 (supercontigs) Clostridium_ramosum-2.0 (contigs) Clostridium_ramosum-2.0 (supercontigs) Clostridium_ramosum-2.0.1 (contigs) Clostridium_ramosum-2.0.1 (supercontigs) Clostridium_scindens-2.0 (contigs) Clostridium_scindens-2.0 (supercontigs) Clostridium_scindens-2.0.1 (contigs) Clostridium_scindens-2.0.1 (supercontigs) Clostridium_spiroforme-2.0 (contigs) Clostridium_spiroforme-2.0 (supercontigs) Clostridium_spiroforme-2.0.1 (contigs) Clostridium_spiroforme-2.0.1 (supercontigs) Clostridium_sporogenes-2.0 (contigs) Clostridium_sporogenes-2.0 (supercontigs) Clostridium_sporogenes-2.0.1 (contigs) Clostridium_sporogenes-2.0.1 (supercontigs) Clostridium_sp_L2-50-2.0 (contigs) Clostridium_sp_L2-50-2.0 (supercontigs) Clostridium_sp_L2-50-3.0.1 (contigs) Clostridium_sp_L2-50-3.0.1 (supercontigs) Clostridium_sp_SS2/1-1.0 (contigs) Clostridium_sp_SS2/1-1.0 (supercontigs) Clostridium_sp_SS2/1-1.0.1 (contigs) Clostridium_sp_SS2/1-1.0.1 (supercontigs) Clostridium_symbiosum-1.0 (contigs) Collinsella_aerofaciens-1.0 (contigs) Collinsella_aerofaciens-3.0.1 (contigs) Collinsella_aerofaciens-3.0.1 (supercontigs) Coprococcus_eutactus-2.0 (contigs) Coprococcus_eutactus-2.0 (supercontigs) Coprococcus_eutactus-2.0.1 (contigs) Coprococcus_eutactus-2.0.1 (supercontigs) Dorea_formicigenerans-3.0.1 (contigs) Dorea_formicigenerans-3.0.1 (supercontigs) Dorea_longicatena-1.0 (contigs) Dorea_longicatena-2.0.1 (contigs) Dorea_longicatena-2.0.1 (supercontigs) Drosophila_simulans_c1674-1.0 (contigs) Drosophila_simulans_c1674-1.0 (reads.unplaced) Drosophila_simulans_md106-1.0 (contigs) Drosophila_simulans_md106-1.0 (reads.unplaced) Drosophila_simulans_md199-1.0 (contigs) Drosophila_simulans_md199-1.0 (reads.unplaced) Drosophila_simulans_mosaic-1.0 (chromosomes) Drosophila_simulans_nc48-1.0 (contigs) Drosophila_simulans_nc48-1.0 (reads.unplaced) Drosophila_simulans_sim4-1.0 (contigs) Drosophila_simulans_sim4-1.0 (reads.unplaced) Drosophila_simulans_sim6-1.0 (contigs) Drosophila_simulans_sim6-1.0 (reads.unplaced) Drosophila_simulans_w501-1.1 (contigs) Drosophila_simulans_w501-1.1 (reads.unplaced) Drosophila_yakuba-7.1 (contigs) Drosophila_yakuba-7.1 (reads.unplaced) Enterobacter_sakazakii-2.0 (contigs) Enterobacter_sakazakii-2.0 (supercontigs) Enterobacter_sakazakii-3.0 (contigs) Enterobacter_sakazakii-3.0 (supercontigs) Enterobacter_sakazakii-4.0 (contigs) Enterobacter_sakazakii-4.0 (supercontigs) Eubacterium_dolichum-2.0 (contigs) Eubacterium_dolichum-2.0 (supercontigs) Eubacterium_dolichum-3.0.1 (contigs) Eubacterium_dolichum-3.0.1 (supercontigs) Eubacterium_eligens-2.0 (contigs) Eubacterium_eligens-2.0 (supercontigs) Eubacterium_eligens-4.0 (contigs) Eubacterium_eligens-5.0 (contigs) Eubacterium_rectale-2.0 (contigs) Eubacterium_rectale-2.0 (supercontigs) Eubacterium_rectale-5.0 (contigs) Eubacterium_rectale-8.0 (contigs) Eubacterium_siraeum-2.0 (contigs) Eubacterium_siraeum-2.0 (supercontigs) Eubacterium_siraeum-3.0.1 (contigs) Eubacterium_siraeum-3.0.1 (supercontigs) Eubacterium_ventriosum-1.0 (contigs) Eubacterium_ventriosum-3.0.1 (contigs) Eubacterium_ventriosum-3.0.1 (supercontigs) Faecalibacterium_prausnitzii_M21/2-2.0 (contigs) Faecalibacterium_prausnitzii_M21/2-2.0 (supercontigs) Faecalibacterium_prausnitzii_M21/2-2.0.1 (contigs) Faecalibacterium_prausnitzii_M21/2-2.0.1 (supercontigs) Gallus_gallus (fosmid_ends) Gallus_gallus-1.0 (contigs) Gallus_gallus-1.0 (reads.unplaced) Gallus_gallus-1.0 (supercontigs) Gallus_gallus-1.0 (ultracontigs) Gallus_gallus-1.0 (chromosomes) Gallus_gallus-2.1 (contigs) Gallus_gallus-2.1 (chromosomes) Histoplasma_capsulatum_G186AR-3.0 (contigs) Histoplasma_capsulatum_G186AR-3.0 (supercontigs) Histoplasma_capsulatum_G217B-3.0 (contigs) Histoplasma_capsulatum_G217B-3.0 (supercontigs) Klebsiella_oxytoca-1.0 (contigs) Klebsiella_oxytoca-1.0 (supercontigs) Klebsiella_pneumoniae-1.0 (chromosomes) Klebsiella_pneumoniae-1.0 (consensus) Klebsiella_pneumoniae-1.0 (plasmid1) Klebsiella_pneumoniae-1.0 (plasmid2) Klebsiella_pneumoniae-1.0 (plasmid3) Klebsiella_pneumoniae-1.0 (plasmid4) Klebsiella_pneumoniae-1.0 (plasmid5) Macaca_mulatta (bac_ends) Macaca_mulatta (fosmid_ends) Macaca_mulatta-1.0 (contigs) Macaca_mulatta-1.0 (reads.unplaced) Macaca_mulatta-1.0 (supercontigs) Ornithorhynchus_anatinus (bac_ends) Ornithorhynchus_anatinus (fosmid_ends) Ornithorhynchus_anatinus-5.0 (contigs) Ornithorhynchus_anatinus-5.0 (reads.unplaced) Ornithorhynchus_anatinus-5.0 (supercontigs) Ornithorhynchus_anatinus-5.0.1 (contigs) Ornithorhynchus_anatinus-5.0.1 (supercontigs) Ornithorhynchus_anatinus-5.0.1 (chromosomes) Ornithorhynchus_anatinus-5.0.1 (reads.unplaced) Ornithorhynchus_anatinus-5.0.1 (removed_data) Pan_troglodytes (bac_ends) Pan_troglodytes (fosmid_ends) Pan_troglodytes-1.0 (contigs) Pan_troglodytes-1.1 (contigs) Pan_troglodytes-1.1 (supercontigs) Pan_troglodytes-2.1 (contigs) Pan_troglodytes-2.1 (supercontigs) Pan_troglodytes-2.1 (chromosomes) Parabacteroides_merdae-1.0 (contigs) Parabacteroides_merdae-2.0.1 (contigs) Parabacteroides_merdae-2.0.1 (supercontigs) Peptostreptococcus_micros-4.0 (contigs) Peptostreptococcus_micros-4.0 (supercontigs) Peptostreptococcus_micros-4.0.1 (contigs) Peptostreptococcus_micros-4.0.1 (supercontigs) Petromyzon_marinus-3.0 (contigs) Petromyzon_marinus-3.0 (supercontigs) Pongo_pygmaeus_abelii (bac_ends) Pongo_pygmaeus_abelii (fosmid_ends) Pongo_pygmaeus_abelii-2.0.1 (contigs) Pongo_pygmaeus_abelii-2.0.1 (supercontigs) Pongo_pygmaeus_abelii-2.0.2 (contigs) Pongo_pygmaeus_abelii-2.0.2 (supercontigs) Pongo_pygmaeus_abelii-2.0.2 (chromosomes) Pongo_pygmaeus_abelii-2.0.2 (removed_data) Pristionchus_pacificus (fosmid_ends) Pristionchus_pacificus-5.0 (contigs) Pristionchus_pacificus-5.0 (reads.unplaced) Pristionchus_pacificus-5.0 (supercontigs) Pristionchus_pacificus-5.0.1 (contigs) Pristionchus_pacificus-5.0.1 (supercontigs) Providencia_stuartii-2.0 (contigs) Providencia_stuartii-2.0 (supercontigs) Providencia_stuartii-2.0.1 (contigs) Providencia_stuartii-2.0.1 (supercontigs) Ruminococcus_gnavus-1.0 (contigs) Ruminococcus_gnavus-1.0.1 (contigs) Ruminococcus_gnavus-1.0.1 (supercontigs) Ruminococcus_lactaris-2.0 (contigs) Ruminococcus_lactaris-2.0 (supercontigs) Ruminococcus_obeum-1.0 (contigs) Ruminococcus_obeum-3.0.1 (contigs) Ruminococcus_obeum-3.0.1 (supercontigs) Ruminococcus_torques-1.0 (contigs) Ruminococcus_torques-2.0.1 (contigs) Ruminococcus_torques-2.0.1 (supercontigs) Saccharomyces_kluyveri-2.0 (contigs) Salmonella_enterica_serovar_Arizonae-1.0 (contigs) Salmonella_enterica_serovar_Arizonae-1.0 (supercontigs) Salmonella_enterica_serovar_Arizonae-3.0 (contigs) Salmonella_enterica_serovar_Arizonae-3.0 (supercontigs) Salmonella_enterica_serovar_Arizonae-4.0 (contigs) Salmonella_enterica_serovar_Arizonae-4.0 (supercontigs) Salmonella_enterica_serovar_Diarizonae-1.0 (contigs) Salmonella_enterica_serovar_Diarizonae-1.0 (supercontigs) Salmonella_enterica_serovar_Diarizonae-2.0 (contigs) Salmonella_enterica_serovar_Diarizonae-2.0 (supercontigs) Salmonella_enterica_serovar_Diarizonae-3.0 (contigs) Salmonella_enterica_serovar_Diarizonae-3.0 (supercontigs) Salmonella_enterica_serovar_Diarizonae-4.0 (contigs) Salmonella_enterica_serovar_Paratyphi_B-1.0 (contigs) Salmonella_enterica_serovar_Paratyphi_B-1.0 (supercontigs) Salmonella_enterica_serovar_Paratyphi_B-2.0 (contigs) Salmonella_enterica_serovar_Paratyphi_B-2.0 (supercontigs) Salmonella_enterica_serovar_Paratyphi_B-3.0 (contigs) Salmonella_enterica_serovar_Paratyphi_B-3.0 (supercontigs) Schmidtea_mediterranea-2.0 (contigs) Schmidtea_mediterranea-3.1 (contigs) Schmidtea_mediterranea-3.1 (supercontigs) Streptococcus_infantarius-2.0 (contigs) Streptococcus_infantarius-2.0 (supercontigs) Streptococcus_infantarius-2.0.1 (contigs) Streptococcus_infantarius-2.0.1 (supercontigs) Taeniopygia_guttata (bac_ends) Taeniopygia_guttata (fosmid_ends) Trichinella_spiralis-1.0 (contigs) Trichinella_spiralis-1.0 (supercontigs) Vibrio_harveyi-3.0 (contigs) Vibrio_harveyi-3.0 (supercontigs) Vibrio_harveyi-4.0 (contigs) Vibrio_harveyi-4.0 (supercontigs) Vibrio_harveyi-5.0 (contigs) Vibrio_harveyi-5.0 (supercontigs)
Select from the following options: Filtering: DUST/SEG none Masking: RepeatMasker none
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Please enter a single sequence of 10000 bases or less (must be in FASTA format)
BLAST contigs are available on the GSC FTP site.